Blog
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OpenVax Neoantigen Prediction Pipeline: A Tutorial
We’ve previously written about the OpenVax neoantigen prediction pipeline, which is the computational basis of 3 clinical trials at Mount Sinai. The purpose of this post is to provide a quick-start tutorial for using our pipeline on your own data...
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Computational Pipeline for Neoantigen Vaccine Trials at Mount Sinai
Cancer immunotherapy aims to recruit the body’s own immune system to attack a tumor, which requires that the tumor be recognized as “foreign” by the immune system. An exciting line of research indicates that genetic mutations acquired by cancer cells...
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GLIPH & TCR clustering
Clustering T-cell receptor sequences and predicting their antigen specificity